Silicosis_phos - phosphoproteome result of a silicosis mouse model
Silicosis_phos.RdThe enriched phosphopeptide quantity data on a silica-exposed mouse model reported by Wang, Zhang, Liu, et al.
Format
A data.frame with 21249 rows and 40 variables:
- Proteins
The proteins uniprot IDs that phosphopeptide affiliated to
- Protein
The first protein uniprot ID
- Gene.names
Gene names of the proteins that phosphopeptide affiliated to
- Localization.prob
The localization probability of the phosphorylated site
- PEP
Posterior error probability of the identification
- Score
Andromeda score of peptide identification
- Score.for.localization
Andromeda score of the MS/MS spectrum used for calculating the localization score for this site
- Amino.acid
The phosphorylated Amino acid
- Intensity columns
Raw intensity of phosphopeptide
- Reverse
The peptide is identified in the decoy database if marked ('+')
- Potential.contaminant
The peptide from a known contaminant protein if marked ('+')
- Positions
The possible phosphorylation positions in peptides
- Position
The most possible position with phosphorylation
Source
Wang M, Zhang Z, Liu J, et al. Gefitinib and fostamatinib target EGFR and SYK to attenuate silicosis: a multi-omics study with drug exploration. Signal Transduct Target Ther. 2022;7(1):157. doi: 10.1038/s41392-022-00959-3.