Construct experiment design basic on colnames parse
get_exdesign_parse.RdConstruct experiment design basic on colnames parse
Usage
get_exdesign_parse(
label,
mode = c("delim", "char"),
chars = 1,
sep = "_",
remove_prefix = TRUE,
remove_suffix = FALSE
)Arguments
- label
Characters, label names(column names) of assay
- mode
one of "delim", "char"
- chars
Integer(1). If mode is "char", how many chars in the end of label are 'replicate'
- sep
Character(1). If mode is "sep", how many chars in the end of label are 'replicate'
Examples
## Parse on delim
samples = c("Quantity.A_1","Quantity.A_2","Quantity.A_3","Quantity.B_1","Quantity.B_2","Quantity.B_3",
"Quantity.C_1","Quantity.C_2")
get_exdesign_parse(samples, mode = "delim", sep = "_")
#> label ID condition replicate
#> 1 A_1 A_1 A 1
#> 2 A_2 A_2 A 2
#> 3 A_3 A_3 A 3
#> 4 B_1 B_1 B 1
#> 5 B_2 B_2 B 2
#> 6 B_3 B_3 B 3
#> 7 C_1 C_1 C 1
#> 8 C_2 C_2 C 2
## Parse on certain character
samples = c("Quantity.A1","Quantity.A2","Quantity.A3","Quantity.B1","Quantity.B2","Quantity.B3",
"Quantity.C1","Quantity.C2")
get_exdesign_parse(samples, mode = "char", chars = 1)
#> label ID condition replicate
#> 1 A1 A1 A 1
#> 2 A2 A2 A 2
#> 3 A3 A3 A 3
#> 4 B1 B1 B 1
#> 5 B2 B2 B 2
#> 6 B3 B3 B 3
#> 7 C1 C1 C 1
#> 8 C2 C2 C 2
# Reserve prefix
get_exdesign_parse(samples, mode = "char", chars = 1, remove_prefix = FALSE)
#> label ID condition replicate
#> 1 Quantity.A1 Quantity.A1 Quantity.A 1
#> 2 Quantity.A2 Quantity.A2 Quantity.A 2
#> 3 Quantity.A3 Quantity.A3 Quantity.A 3
#> 4 Quantity.B1 Quantity.B1 Quantity.B 1
#> 5 Quantity.B2 Quantity.B2 Quantity.B 2
#> 6 Quantity.B3 Quantity.B3 Quantity.B 3
#> 7 Quantity.C1 Quantity.C1 Quantity.C 1
#> 8 Quantity.C2 Quantity.C2 Quantity.C 2