Count matrix to DESeqDataSet conversion using an experimental design
make_dds.Rdmake_dds creates a DESeqDataSet object from a gene counts matrix and experimental design table. The gene identifiers should in the first column of countData.
Usage
make_dds(countData, expdesign, design = as.formula(~condition))Arguments
- countData
Gene counts matrix or a data.frame contain counts data.
- expdesign
Data.frame, Experimental design with 'label', 'condition' and 'replicate' information.
- design
The design formula that transmitted to
DESeqDataSet